BLAST function on our site is limited to a single organism due to maintenance activity on our computational cluster.
Info • Penicillium chrysogenum v1.0

Status

This draft release was produced using 2.8kb 454 paired end data. This organism was identified as a contaminant in the Postia placenta MAD 698R data set. Data belonging to this contaminant was screened out and reassembled separately using Newbler. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium_chrysogenum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 31.34
Sequencing read coverage depth 21.97
# of contigs 299
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 3
Scaffold L50 (Mbp) 5.34
# of gaps 272
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 7.36, 6.65, 5.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 54 6 11.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1592 1359
transcript 1407 1188
exon 452 238
intron 89 62
description:
protein length (aa) 469 396
exons per gene 3.12 3
# of gene models 11396


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.