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Info • Penicillium digitatum Pd1


The genome sequence and gene models of Penicillium digitatum Pd1 have not been determined by the JGI, but were downloaded from NCBI on 6/6/2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Penicillium digitatum Pd1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.88
Sequencing read coverage depth
# of contigs 561
# of scaffolds 561
# of scaffolds >= 2Kbp 543
Scaffold N50 89
Scaffold L50 (Mbp) 0.09
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.35, 0.30, 0.29

Gene Models ExternalModels
length (bp) of: average median
gene 1504 1248
transcript 1371 1122
exon 511 267
intron 81 62
protein length (aa) 457 374
exons per gene 2.68 2
# of gene models 8946

Genome Reference(s)


This project was not sequenced at the JGI.