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Info • Penicillium expansum ATCC 24692 v1.0

Status

The Penicillium expansum genome was sequenced using Illumina technology and assembled with AllPathsLG version R44849. Subsequently, the genome was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium expansum ATCC 24692 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.45
Sequencing read coverage depth 119x
# of contigs 136
# of scaffolds 12
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 5.33
# of gaps 124
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 7.02, 5.33, 5.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 40180 40151 99.9%
Other EST_assemblies 24947 17826 71.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1830 1587
transcript 1657 1438
exon 519 303
intron 81 61
description:
protein length (aa) 479 405
exons per gene 3.19 3
# of gene models 11807


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.