Status
The genome sequence and gene models of Penicillium expansum d1 have not been determined by the JGI, but were downloaded from NCBI on 6/6/2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Penicillium expansum d1 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.07 |
| Sequencing read coverage depth | |
| # of contigs | 270 |
| # of scaffolds | 270 |
| # of scaffolds >= 2Kbp | 222 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.36 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.16, 1.01, 0.98 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1684 | 1406 |
| transcript | 1512 | 1257 |
| exon | 482 | 253 |
| intron | 83 | 61 |
| description: | ||
| protein length (aa) | 504 | 419 |
| exons per gene | 3.14 | 3 |
| # of gene models | 11023 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ballester AR, Marcet-Houben M, Levin E, Sela N, Selma-Lázaro C, Carmona L, Wisniewski M, Droby S, González-Candelas L, Gabaldón T
Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity.
Mol Plant Microbe Interact. 2015 Mar;28(3):232-48. doi: 10.1094/MPMI-09-14-0261-FI
Ballester AR, Marcet-Houben M, Levin E, Sela N, Selma-Lázaro C, Carmona L, Wisniewski M, Droby S, González-Candelas L, Gabaldón T
Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity.
Mol Plant Microbe Interact. 2015 Mar;28(3):232-48. doi: 10.1094/MPMI-09-14-0261-FI
Funding
This project was not sequenced at the JGI.
