Status
[May 2024] This genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Originally processed as a metagenome, no contaminants were identified so the mitochondrial genome could be directly associated with the nuclear assembly and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.35 |
| Sequencing read coverage depth | 964x |
| # of contigs | 11 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 4.46 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.04, 4.75, 4.46 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1872 | 1497 |
| transcript | 1621 | 1338 |
| exon | 464 | 248 |
| intron | 102 | 59 |
| description: | ||
| protein length (aa) | 540 | 446 |
| exons per gene | 3.49 | 3 |
| # of gene models | 10122 |
Collaborators
- Sara Branco, University of Colorado Denver, Denver, CO
Links
- Myco-Ed homepage
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Penicillium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
