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Info • Penicillium fellutanum ATCC 48694 v1.0

Status

The Penicillium fellutanum genome was sequenced using Illumina technology and assembled with AllPathsLG version R44849. Subsequently the genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium fellutanum ATCC 48694 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.20
Sequencing read coverage depth 121x
# of contigs 50
# of scaffolds 20
# of scaffolds >= 2Kbp 12
Scaffold N50 3
Scaffold L50 (Mbp) 4.94
# of gaps 30
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 5.82, 5.25, 4.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 40357 40292 99.8%
Other EST_assemblies 19137 16730 87.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1816 1596
transcript 1652 1452
exon 529 318
intron 79 61
description:
protein length (aa) 476 410
exons per gene 3.12 3
# of gene models 11300


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.