Status
The Penicillium glabrum DAOM 239074 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44849. Subsequently the genome was annotated using the JGI annotation pipeline and custom analyses.
Summary statistics for the Penicillium glabrum DAOM 239074
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.16 |
| Sequencing read coverage depth | 96x |
| # of contigs | 189 |
| # of scaffolds | 117 |
| # of scaffolds >= 2Kbp | 82 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 4.36 |
| # of gaps | 72 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 6.14, 4.95, 4.80 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | CombestEstClusters | 56695 | 56584 | 99.8% |
| Other | EST_assemblies | 25975 | 25612 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1777 | 1562 |
| transcript | 1617 | 1421 |
| exon | 531 | 313 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 467 | 400 |
| exons per gene | 3.05 | 3 |
| # of gene models | 12328 |
Collaborators
Dave Greenshields, Novozymes
Keith Seifert, Agriculture and Agri-Food Canada
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
