Status
The genome sequence and gene models of Penicillium griseofulvum PG3 have not been determined by the JGI, but were downloaded from NCBI on 6/6/2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Penicillium griseofulvum PG3
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 29.14 |
| Sequencing read coverage depth | |
| # of contigs | 92 |
| # of scaffolds | 92 |
| # of scaffolds >= 2Kbp | 69 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 2.27 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.46, 3.21, 2.73 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1733 | 1433 |
| transcript | 1564 | 1287 |
| exon | 494 | 256 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 521 | 429 |
| exons per gene | 3.16 | 3 |
| # of gene models | 9630 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Banani H, Marcet-Houben M, Ballester AR, Abbruscato P, González-Candelas L, Gabaldón T, Spadaro D
Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.
BMC Genomics. 2016 Jan 5;17():19. doi: 10.1186/s12864-015-2347-x
Banani H, Marcet-Houben M, Ballester AR, Abbruscato P, González-Candelas L, Gabaldón T, Spadaro D
Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.
BMC Genomics. 2016 Jan 5;17():19. doi: 10.1186/s12864-015-2347-x
Funding
This project was not sequenced at the JGI.
