Info • Penicillium janthinellum ATCC 10455 v1.0

Status

Feb 2014. The Penicillium janthinellum genome was sequenced using Illumina technology and assembled using AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Penicillium janthinellum ATCC 10455 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.15
Sequencing read coverage depth 99
# of contigs 273
# of scaffolds 94
# of scaffolds >= 2Kbp 87
Scaffold N50 6
Scaffold L50 (Mbp) 2.30
# of gaps 179
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 4.25, 3.81, 3.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 26935 26321 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1773 1523
transcript 1585 1362
exon 517 304
intron 93 65
description:
protein length (aa) 457 380
exons per gene 3.07 3
# of gene models 12098


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.