Status
The genome sequence and gene models of Penicillium occitanis CL100 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.25 |
| Sequencing read coverage depth | |
| # of contigs | 1591 |
| # of scaffolds | 1591 |
| # of scaffolds >= 2Kbp | 1212 |
| Scaffold N50 | 166 |
| Scaffold L50 (Mbp) | 0.07 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.30, 0.29, 0.29 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1712 | 1439 |
| transcript | 1537 | 1293 |
| exon | 478 | 262 |
| intron | 81 | 60 |
| description: | ||
| protein length (aa) | 512 | 431 |
| exons per gene | 3.21 | 3 |
| # of gene models | 11231 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Bravo-Ruiz G, Sassi AH, Marcet-Houben M, Di Pietro A, Gargouri A, Gabaldon T, Roncero MIG
Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum.
Front Microbiol. 2017;8():1627. doi: 10.3389/fmicb.2017.01627
Bravo-Ruiz G, Sassi AH, Marcet-Houben M, Di Pietro A, Gargouri A, Gabaldon T, Roncero MIG
Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum.
Front Microbiol. 2017;8():1627. doi: 10.3389/fmicb.2017.01627
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Penicillium
Funding
This project was not sequenced at the JGI.
