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Info • Penicillium solitum IBT 30036 v1.0

Status

[October 2017] The Penicillium solitum IBT 30036 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Penicillium solitum IBT 30036 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.75
Sequencing read coverage depth 103.4x
# of contigs 337
# of scaffolds 264
# of scaffolds >= 2Kbp 245
Scaffold N50 41
Scaffold L50 (Mbp) 0.26
# of gaps 73
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.93, 0.81, 0.78


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32166 31790 98.8%
Ests est.fasta 50524310 46805981 92.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1764 1544
transcript 1608 1392
exon 519 304
intron 76 61
description:
protein length (aa) 471 399
exons per gene 3.10 3
# of gene models 11843


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.