Status
[November 2021] The genome sequence of Perenniporia fraxinea SS3 was not determined by the Joint Genome Institute (JGI) but was provided by Dr. Chiaki Hori on July 2, 2021. To allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to generate structural and functional annotations.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.63 |
| Sequencing read coverage depth | |
| # of contigs | 573 |
| # of scaffolds | 571 |
| # of scaffolds >= 2Kbp | 430 |
| Scaffold N50 | 35 |
| Scaffold L50 (Mbp) | 0.26 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.61, 0.89, 0.77 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 63764 | 62808 | 98.5% |
| Ests | est.fasta | 280663836 | 278891633 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2005 | 1756 |
| transcript | 1624 | 1415 |
| exon | 260 | 157 |
| intron | 75 | 60 |
| description: | ||
| protein length (aa) | 459 | 379 |
| exons per gene | 6.25 | 5 |
| # of gene models | 11428 |
Collaborators
- Chiaki Hori, Hokkaido University, Sapporo, Japan
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Polyporales
- JGI EcoGroup Portal: White Rot Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
