Info • Periconia macrospinosa DSE2036 v1.0

Status

Assembly v1 (September 2014) is a minimal draft assembly of Illumina gDNAs using successively Velvet and AllPathsLG.

Summary statistics for the Periconia macrospinosa DSE2036 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.99
Sequencing read coverage depth 139.4x
# of contigs 2470
# of scaffolds 1566
# of scaffolds >= 2Kbp 1217
Scaffold N50 101
Scaffold L50 (Mbp) 0.14
# of gaps 904
% of scaffold length in gaps 1.8%
Three largest Scaffolds (Mbp) 1.32, 0.77, 0.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 40915 38019 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1564 1340
transcript 1418 1202
exon 537 338
intron 91 61
description:
protein length (aa) 411 337
exons per gene 2.64 2
# of gene models 18750


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.