Status
[May 2024] The Mycosphaerellaceae sp. 406A_T16_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.43 |
| Sequencing read coverage depth | 207.31x |
| # of contigs | 343 |
| # of scaffolds | 336 |
| # of scaffolds >= 2Kbp | 296 |
| Scaffold N50 | 39 |
| Scaffold L50 (Mbp) | 0.27 |
| # of gaps | 7 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.15, 0.74, 0.73 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 38526 | 37579 | 97.5% |
| Ests | est.fasta | 195028634 | 189576581 | 97.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1805 | 1561 |
| transcript | 1685 | 1447 |
| exon | 661 | 372 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 473 | 387 |
| exons per gene | 2.55 | 2 |
| # of gene models | 10631 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Dothideomycetidae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
