Info • Pestalotiopsis sp. ATCC 11816 v1.0


[June 2022] The Pestalotiopsis sp. ATCC 11816 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 50.98
Sequencing read coverage depth 96.13x
# of contigs 11
# of scaffolds 11
# of scaffolds >= 2Kbp 10
Scaffold N50 4
Scaffold L50 (Mbp) 6.41
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.81, 7.27, 7.17

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62421 61505 98.5%
Ests est.fasta 139282614 138458489 99.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 2003 1726
transcript 1793 1562
exon 596 377
intron 107 66
protein length (aa) 506 423
exons per gene 3.01 2
# of gene models 15865


This work was authored [in part] by the National Renewable Energy Laboratory (NREL), operated by Alliance for Sustainable Energy, LLC, for the U.S. Department of Energy (DOE) under Contract No. DE-AC36-08GO28308. This work was supported by the Laboratory Directed Research and Development (LDRD) Program at NREL. The views expressed in the article do not necessarily represent the views of the DOE or the U.S. Government.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.