Info • Peterozyma xylosa NRRL Y-12939

Status

The genome of Peterozyma xylosa NRRL Y-12939 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Peterozyma xylosa NRRL Y-12939 release are below.
Genome Assembly
Genome Assembly size (Mbp) 12.96
Sequencing read coverage depth 36x
# of contigs 244
# of scaffolds 234
# of scaffolds >= 2Kbp 47
Scaffold N50 8
Scaffold L50 (Mbp) 0.62
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.22, 1.04, 0.94


Gene Models ExternalModels
length (bp) of: average median
gene 1563 1301
transcript 1516 1279
exon 1217 1024
intron 196 94
description:
protein length (aa) 505 426
exons per gene 1.25 1
# of gene models 5982


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.