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Info • Tricharina aff. praecox DOB1048 v1.0

Status

[January 2019] The Tricharina aff. praecox DOB1048 genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Tricharina aff. praecox DOB1048 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.93
Sequencing read coverage depth 55.57x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 8
Scaffold L50 (Mbp) 1.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.07, 3.82, 2.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38872 37360 96.1%
Ests est.fasta 105832686 104685354 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1495
transcript 1551 1299
exon 466 299
intron 88 64
description:
protein length (aa) 431 343
exons per gene 3.33 3
# of gene models 10389


Collaborators

Tom Bruns at University of California Berkeley

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.