Info • Penicillium flavigenum ITEM 17421 v1.0

Status

[August 2022] The Penicillium flavigenum ITEM 17421 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 33.39
Sequencing read coverage depth 187.74x
# of contigs 212
# of scaffolds 178
# of scaffolds >= 2Kbp 157
Scaffold N50 10
Scaffold L50 (Mbp) 1.05
# of gaps 34
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.70, 2.34, 2.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47904 45863 95.7%
Ests est.fasta 219494932 183707440 83.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1930 1671
transcript 1756 1525
exon 555 333
intron 82 61
description:
protein length (aa) 472 388
exons per gene 3.16 3
# of gene models 12081


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.