Status
[August 2022] The Penicillium gravinicasei ITEM 17411 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.08 |
| Sequencing read coverage depth | 228.77x |
| # of contigs | 176 |
| # of scaffolds | 166 |
| # of scaffolds >= 2Kbp | 146 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.92 |
| # of gaps | 10 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.81, 1.68, 1.50 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 32531 | 29596 | 91.0% |
| Ests | est.fasta | 219494932 | 45411163 | 20.7% |
- Please note: RNA library suffers from significant rRNA contamination
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1977 | 1704 |
| transcript | 1813 | 1566 |
| exon | 562 | 337 |
| intron | 76 | 58 |
| description: | ||
| protein length (aa) | 498 | 415 |
| exons per gene | 3.23 | 3 |
| # of gene models | 9714 |
Collaborators
- Scott Baker at DOE Environmental Molecular Sciences Laboratory, Richland, WA, USA and DOE Joint Bioenergy Institute, Berkeley, CA, USA
- Giancarlo Perrone at Institute of Sciences of Food Production, National Research Council, Bari, Italy
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Penicillium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
