Info • Puccinia graminis f. sp. tritici Ug99 haplotype A

Status

The phased genome sequence and gene models for Puccinia graminis f. sp. tritici Ug99 haplotype A were not determined by the Joint Genome Institute (JGI), but were provided by Feng Li on Sept 19, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Any contigs and associated gene models that could not be confidently phased from haplotype C are also included here.

Summary statistics for the Puccinia graminis f. sp. tritici Ug99 haplotype A release are below.
Genome Assembly
Genome Assembly size (Mbp) 91.84
Sequencing read coverage depth
# of contigs 373
# of scaffolds 373
# of scaffolds >= 2Kbp 373
Scaffold N50 35
Scaffold L50 (Mbp) 0.78
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.44, 2.38, 2.36


Gene Models ExternalModels
length (bp) of: average median
gene 1731 1352
transcript 1357 992
exon 324 175
intron 119 88
description:
protein length (aa) 356 250
exons per gene 4.19 3
# of gene models 19772


Collaborators

Melania Figueroa, CSIRO, Australia

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Li F, Upadhyaya NM, Sperschneider J, Matny O, Nguyen-Phuc H, Mago R, Raley C, Miller ME, Silverstein KAT, Henningsen E, Hirsch CD, Visser B, Pretorius ZA, Steffenson BJ, Schwessinger B, Dodds PN, Figueroa M
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.
Nat Commun. 2019 Nov 7;10(1):5068. doi: 10.1038/s41467-019-12927-7

Funding

This project was not sequenced at the JGI.