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Info • Phaeosphaeriaceae sp. PMI_808 v1.0

Status

Assembly v1 (January 2016) is a standard draft assembly of PacBio and Illumina gDNA reads. A total of 591 scaffolds and 56.4 Mbp were assembled with Falcon, improved with finisherSC, and polished with Quiver.

Summary statistics for the Phaeosphaeriaceae sp. PMI_808 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.37
Sequencing read coverage depth 148.72x
# of contigs 591
# of scaffolds 591
# of scaffolds >= 2Kbp 579
Scaffold N50 45
Scaffold L50 (Mbp) 0.33
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.63, 1.29, 1.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39656 36212 91.3%
Ests est.fasta 129162635 109769858 85.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1589 1347
transcript 1452 1215
exon 534 332
intron 82 57
description:
protein length (aa) 428 346
exons per gene 2.72 2
# of gene models 15864


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.