BLAST function on our site is limited to a single organism due to maintenance activity on our computational cluster.
Info • Phaeomoniella chlamydospora UCRPC4

Status

This genome was sequenced by Abraham Morales-Cruz, Dario Cantu et al in the Department of Viticulture and Enology, University of California Davis
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens.

 

Summary statistics for the Phaeomoniella chlamydospora UCRPC4 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.51
Sequencing read coverage depth 107.28x
# of contigs 830
# of scaffolds 702
# of scaffolds >= 2Kbp 303
Scaffold N50 50
Scaffold L50 (Mbp) 0.18
# of gaps 128
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.65, 0.51, 0.50


Gene Models ExternalModels
length (bp) of: average median
gene 1852 1510
transcript 1641 1356
exon 587 286
intron 119 58
description:
protein length (aa) 547 452
exons per gene 2.79 2
# of gene models 6907


Genome Reference(s)

Funding

This project was not sequenced at the JGI.