Info • Phaeosolenia platensis CBS 268.64 v1.0

Status

[July 2018] The Phaeosolenia platensis CBS 268.64 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phaeosolenia platensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 59.05
Sequencing read coverage depth 97.09x
# of contigs 721
# of scaffolds 721
# of scaffolds >= 2Kbp 718
Scaffold N50 49
Scaffold L50 (Mbp) 0.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.89, 1.67, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 68565 61864 90.2%
Ests est.fasta 174884108 169752395 97.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1785 1541
transcript 1454 1259
exon 250 155
intron 71 56
description:
protein length (aa) 425 355
exons per gene 5.81 5
# of gene models 16000


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.