Info • Phaeosphaeria poagena MPI-PUGE-AT-0046c v1.0

Status

[March 2018] The Phaeosphaeria poagena MPI-PUGE-AT-0046c genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phaeosphaeria poagena v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.08
Sequencing read coverage depth 117.16x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 9
Scaffold L50 (Mbp) 1.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.71, 2.15, 2.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40544 39629 97.7%
Ests est.fasta 153499464 152728026 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1577
transcript 1671 1462
exon 607 392
intron 77 55
description:
protein length (aa) 474 398
exons per gene 2.75 2
# of gene models 12804


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.