Status
[September 2020] The Phanerochaete chrysosporium RP-78 v3.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. Gene models from Phanerochaete chrysosporium RP-78 v2.0 were mapped onto the v3.0 assembly for visualization purposes, but were not included in the FilteredModels set.
Summary statistics for the Phanerochaete chrysosporium
RP-78 v3.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.91 |
| Sequencing read coverage depth | 190.59x |
| # of contigs | 19 |
| # of scaffolds | 19 |
| # of scaffolds >= 2Kbp | 19 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 3.04 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.87, 3.64, 3.63 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 348953247 | 347624149 | 99.6% |
| Other | Trinity_assembled_Illumina_transcriptome | 84787 | 69773 | 82.3% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 2197 | 1852 |
| transcript | 1871 | 1565 |
| exon | 297 | 174 |
| intron | 64 | 56 |
| description: | ||
| protein length (aa) | 454 | 372 |
| exons per gene | 6.30 | 5 |
| # of gene models | 12524 |
Collaborators
- Michael Freitag, Oregon State University, Oregon
- Daniel Cullen, US Forest Service, USDA, Wisconsin
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Polyporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
