Info • Phyllosticta citrichinaensis CBS 130529 v1.0

Status

[February 2017] The Phyllosticta citrichinaensis CBS 130529 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citrichinaensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.16
Sequencing read coverage depth 162.91x
# of contigs 25
# of scaffolds 25
# of scaffolds >= 2Kbp 23
Scaffold N50 4
Scaffold L50 (Mbp) 2.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.27, 4.21, 2.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38100 36007 94.5%
Ests est.fasta 69130444 67287013 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1611 1358
transcript 1458 1215
exon 548 347
intron 94 58
description:
protein length (aa) 415 330
exons per gene 2.66 2
# of gene models 11092


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.