Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Phellinus igniarius CCBS 575 v1.0

Status

[March 2018] The Phellinus igniarius CCBS 575 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phellinus igniarius CCBS 575 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.45
Sequencing read coverage depth 132.01x
# of contigs 485
# of scaffolds 485
# of scaffolds >= 2Kbp 475
Scaffold N50 37
Scaffold L50 (Mbp) 0.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.04, 2.58, 1.59


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45106 40697 90.2%
Ests est.fasta 163121191 161902040 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1926 1684
transcript 1561 1344
exon 245 149
intron 70 60
description:
protein length (aa) 453 373
exons per gene 6.37 5
# of gene models 11210


Collaborators

Francis M. Martin, INRA, France

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.