Info • Leotiomycetes sp. MPI-SDFR-AT-0126 v1.0

Status

[February 2018] The Leotiomycetes sp. MPI-SDFR-AT-0126 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Leotiomycetes sp. MPI-SDFR-AT-0126 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.04
Sequencing read coverage depth 108.22x
# of contigs 43
# of scaffolds 43
# of scaffolds >= 2Kbp 42
Scaffold N50 8
Scaffold L50 (Mbp) 2.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.19, 3.95, 3.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45902 44951 97.9%
Ests est.fasta 137064443 136517817 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1822 1613
transcript 1646 1450
exon 505 321
intron 80 58
description:
protein length (aa) 465 391
exons per gene 3.26 3
# of gene models 17024


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.