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Info • Phialocephala subalpina UAMH 11012

Status

The Phialocephala subalpina UAMH 11012 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 69.69
Sequencing read coverage depth
# of contigs 2358
# of scaffolds 205
# of scaffolds >= 2Kbp 205
Scaffold N50 17
Scaffold L50 (Mbp) 1.43
# of gaps 2153
% of scaffold length in gaps 4.1%
Three largest Scaffolds (Mbp) 3.93, 3.72, 3.36


Gene Models ExternalModels
length (bp) of: average median
gene 1641 1407
transcript 1458 1227
exon 445 260
intron 82 57
description:
protein length (aa) 486 409
exons per gene 3.28 3
# of gene models 20173


Genome Reference(s)

Funding

This project was not sequenced at the JGI.