Info • Phlebopus sp. FC_14 v2.0

Status

[December 2019] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assemblied separately and is available on the Download page.

Summary statistics for the Phlebopus sp. FC_14 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.10
Sequencing read coverage depth 346.79x
# of contigs 158
# of scaffolds 158
# of scaffolds >= 2Kbp 158
Scaffold N50 6
Scaffold L50 (Mbp) 2.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.88, 3.46, 3.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 209185547 207134796 99.0%
Other JGI_RNA_contigs 85153 82500 96.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1869 1624
transcript 1536 1315
exon 242 149
intron 64 56
description:
protein length (aa) 450 367
exons per gene 6.36 5
# of gene models 9409


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.