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Info • Phlebia brevispora HHB-7030 SS6 v1.0

Status

This draft release was produced using Sanger reads, shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and Roche (454) paired end. Gap closure with gapResolution closed 486 gaps (11%) in initial assembly. Newbler was the assembler. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Phlebia brevispora HHB-7030 SS6 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 49.96
Sequencing read coverage depth 42.56
# of contigs 3178
# of scaffolds 1645
# of scaffolds >= 2Kbp 1645
Scaffold N50 12
Scaffold L50 (Mbp) 1.31
# of gaps 1533
% of scaffold length in gaps 7.0%
Three largest Scaffolds (Mbp) 3.50, 3.18, 2.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 12293 11140 90.6%
Ests ESTs 1435810 1327083 92.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1627 1347
transcript 1274 1058
exon 225 140
intron 78 57
description:
protein length (aa) 400 329
exons per gene 5.66 4
# of gene models 16170


Collaborators

 

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.