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Info • Phlebia centrifuga FBCC195

Status

Phlebia centrifuga was sequenced by CBS-KNAW Fungal Biodiversity Centre and University of Helsinki using Illumina HiSeq2500, and annotated with software Glimmer v3.02 and EvidenceModeler v1.1.1 which integrated mRNA-Seq evidence to improve gene prediction. JGI tools were used to add functional annotations to the gene models.

Summary statistics for the Phlebia centrifuga release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.85
Sequencing read coverage depth
# of contigs 3667
# of scaffolds 3022
# of scaffolds >= 2Kbp 1652
Scaffold N50 201
Scaffold L50 (Mbp) 0.05
# of gaps 645
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.44, 0.24, 0.22


Gene Models ExternalModels
length (bp) of: average median
gene 1378 1053
transcript 1134 855
exon 274 170
intron 80 58
description:
protein length (aa) 378 285
exons per gene 4.14 3
# of gene models 13785


Collaborators

Ronald P. de Vries, CBS-KNAW Fungal Biodiversity Centre

Kristiina Hildén, University of Helsinki

Miia Mäkelä, University of Helsinki

Genome Reference(s)

Funding

This project was not sequenced at the JGI.