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Info • Phlebiopsis gigantea v1.0

Status

This draft release was produced using Illumina data and wgsim simulated read pairs using Newbler assembly as reference. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Phlebiopsis gigantea 11061_1 CR5-6 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 30.14
Sequencing read coverage depth 144.9
# of contigs 1195
# of scaffolds 573
# of scaffolds >= 2Kbp 506
Scaffold N50 72
Scaffold L50 (Mbp) 0.12
# of gaps 622
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 0.61, 0.54, 0.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 42986 17915 41.7%


Gene Models FilteredModels2
length (bp) of: average median
gene 1714 1459
transcript 1380 1164
exon 230 145
intron 69 56
description:
protein length (aa) 411 338
exons per gene 6.00 5
# of gene models 11891


Collaborators

  • PI: Dan Cullen, USDA Forest Products Laboratory
  • David Hibbett, Clark University
  • Igor Grigoriev, DOE Joint Genome Institute

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.