Info • Pholiota conissans CIRM-BRFM 674 v1.0

Status

(Dec 2015) The Pholiota conissans CIRM-BRFM 674 genome was sequenced using Illuminaand assembled with Velvet (Zerbino and Birney, 2008) and AllPathsLG release version R49403.

Summary statistics for the Pholiota conissans CIRM-BRFM 674 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.96
Sequencing read coverage depth 141.2x
# of contigs 1558
# of scaffolds 1310
# of scaffolds >= 2Kbp 1065
Scaffold N50 114
Scaffold L50 (Mbp) 0.10
# of gaps 248
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.79, 0.53, 0.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46281 45172 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1689 1420
transcript 1386 1155
exon 250 150
intron 69 59
description:
protein length (aa) 399 323
exons per gene 5.53 4
# of gene models 16589


Collaborators

Marie-Noëlle Rosso, Biodiversité et Biotechnologie Fongique INRA - Aix Marseille Université, France

José María Barrasa, Universidad de Alcalá, Spain

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.