Status
[March 2018] The Pholiota molesta CBS 144467 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Pholiota molesta v1.0 release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 66.04 |
Sequencing read coverage depth | 65.79x |
# of contigs | 701 |
# of scaffolds | 701 |
# of scaffolds >= 2Kbp | 694 |
Scaffold N50 | 65 |
Scaffold L50 (Mbp) | 0.25 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.61, 1.42, 1.37 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 82766 | 59592 | 72.0% |
Ests | est.fasta | 133724453 | 119597333 | 89.4% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1807 | 1562 |
transcript | 1436 | 1238 |
exon | 232 | 144 |
intron | 73 | 59 |
description: | ||
protein length (aa) | 417 | 342 |
exons per gene | 6.20 | 5 |
# of gene models | 17825 |
Collaborators
- Tom Bruns at University of California Berkeley
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Steindorff AS, Carver A, Calhoun S, Stillman K, Liu H, Lipzen A, He G, Yan M, Pangilinan J, LaButti K, Ng V, Bruns TD, Grigoriev IV
Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.
Environ Microbiol. 2021 Jan;23(1):99-109. doi: 10.1111/1462-2920.15273
Steindorff AS, Carver A, Calhoun S, Stillman K, Liu H, Lipzen A, He G, Yan M, Pangilinan J, LaButti K, Ng V, Bruns TD, Grigoriev IV
Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.
Environ Microbiol. 2021 Jan;23(1):99-109. doi: 10.1111/1462-2920.15273
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes
- JGI Pyrophilous fungi EcoGroup
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.