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Info • Pholiota molesta CBS 144467 v1.0

Status

[March 2018] The Pholiota molesta CBS 144467 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pholiota molesta v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 66.04
Sequencing read coverage depth 65.79x
# of contigs 701
# of scaffolds 701
# of scaffolds >= 2Kbp 694
Scaffold N50 65
Scaffold L50 (Mbp) 0.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.61, 1.42, 1.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 82766 59592 72.0%
Ests est.fasta 133724453 119597333 89.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1807 1562
transcript 1436 1238
exon 232 144
intron 73 59
description:
protein length (aa) 417 342
exons per gene 6.20 5
# of gene models 17825


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.