Info • Phoma multirostrata 7a v1.0

Status

[August 2018] The Phoma multirostrata 7a genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phoma multirostrata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.28
Sequencing read coverage depth 439.75x
# of contigs 78
# of scaffolds 78
# of scaffolds >= 2Kbp 78
Scaffold N50 16
Scaffold L50 (Mbp) 0.79
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.50, 1.38, 1.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31589 30039 95.1%
Ests est.fasta 163665949 161588358 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1796 1579
transcript 1676 1474
exon 637 408
intron 76 54
description:
protein length (aa) 472 400
exons per gene 2.63 2
# of gene models 12099


Collaborators

Oded Yarden, The Hebrew University of Jerusalem, Rehovot, Israel

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.