Info • Phoma tracheiphila IPT5 v1.0


[May 2014] The Phoma tracheiphila genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phoma tracheiphila IPT5 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.24
Sequencing read coverage depth 98.6x
# of contigs 431
# of scaffolds 273
# of scaffolds >= 2Kbp 231
Scaffold N50 20
Scaffold L50 (Mbp) 0.53
# of gaps 158
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.52, 1.52, 1.30

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 25313 24354 96.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1452
transcript 1555 1330
exon 583 371
intron 84 57
protein length (aa) 441 362
exons per gene 2.67 2
# of gene models 13209


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.