Info • Phycomyces blakesleeanus UBC21 v2.0

Status

[December 2019] The Phycomyces blakesleeanus UBC21 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. As UBC21 is very closely related to NRRL 1555 (Phybl2), when predicted gene models were nearly identical to those from NRRL 1555, manual curations were carried over to UBC21 models to maximize details on gene function. A track of models from NRRL 1555 and their locations in UBC21 are also available on the genome browser.

Summary statistics for the Phycomyces blakesleeanus UBC21 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.67
Sequencing read coverage depth 473.53x
# of contigs 116
# of scaffolds 116
# of scaffolds >= 2Kbp 116
Scaffold N50 9
Scaffold L50 (Mbp) 1.89
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.03, 4.40, 3.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 76311 69580 91.2%
Ests est.fasta 105106813 104119095 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1869 1608
transcript 1424 1218
exon 292 170
intron 117 90
description:
protein length (aa) 402 328
exons per gene 4.87 4
# of gene models 12840


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lax C, Mondo SJ, Osorio-Concepción M, Muszewska A, Corrochano-Luque M, Gutiérrez G, Riley R, Lipzen A, Guo J, Hundley H, Amirebrahimi M, Ng V, Lorenzo-Gutiérrez D, Binder U, Yang J, Song Y, Cánovas D, Navarro E, Freitag M, Gabaldón T, Grigoriev IV, Corrochano LM, Nicolás FE, Garre V
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales.
Nat Commun. 2024 Jul 18;15(1):6066. doi: 10.1038/s41467-024-50365-2

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.