Info • Phyllosticta capitalensis CBS 128856 v1.0

Status

[March 2017] The Phyllosticta capitalensis CBS 128856 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta capitalensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.46
Sequencing read coverage depth 249.25x
# of contigs 14
# of scaffolds 14
# of scaffolds >= 2Kbp 14
Scaffold N50 5
Scaffold L50 (Mbp) 2.86
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.19, 3.78, 3.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32805 32259 98.3%
Ests est.fasta 60090625 59839417 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1607 1335
transcript 1481 1222
exon 568 361
intron 81 56
description:
protein length (aa) 429 343
exons per gene 2.61 2
# of gene models 12063


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW
Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol. 2019 Dec;20(12):1619-1635. doi: 10.1111/mpp.12861

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.