Info • Phyllosticta capitalensis CBS 173.77 v2.0

Status

[June 2020] The Phyllosticta capitalensis CBS 173.77 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta capitalensis CBS 173.77 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.88
Sequencing read coverage depth 396.57x
# of contigs 16
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 5
Scaffold L50 (Mbp) 2.88
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.22, 3.84, 3.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34433 32180 93.5%
Ests est.fasta 158783167 156980967 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1801 1551
transcript 1658 1417
exon 592 371
intron 81 57
description:
protein length (aa) 471 387
exons per gene 2.80 2
# of gene models 10989


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.