Info • Phyllosticta sp. CPC 27913 v1.0

Status

[May 2017] The Phyllosticta sp. CPC 27913 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta sp CPC 27913 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.27
Sequencing read coverage depth 218.81x
# of contigs 82
# of scaffolds 82
# of scaffolds >= 2Kbp 82
Scaffold N50 13
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.53, 1.84, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42496 41180 96.9%
Ests est.fasta 100478150 98821518 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1603 1330
transcript 1468 1197
exon 549 342
intron 82 57
description:
protein length (aa) 428 340
exons per gene 2.68 2
# of gene models 11259


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW
Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol. 2019 Dec;20(12):1619-1635. doi: 10.1111/mpp.12861

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.