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Info • Phyllosticta paracitricarpa CBS 141358 v1.0

Status

[December 2020] The Phyllosticta paracitricarpa CBS 141358 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta paracitricarpa CBS 141358 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.83
Sequencing read coverage depth 38.45x
# of contigs 90
# of scaffolds 90
# of scaffolds >= 2Kbp 90
Scaffold N50 17
Scaffold L50 (Mbp) 0.65
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.23, 1.15, 1.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34490 30927 89.7%
Ests est.fasta 161307941 158411639 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1839 1583
transcript 1674 1429
exon 571 351
intron 87 58
description:
protein length (aa) 474 387
exons per gene 2.93 3
# of gene models 10064


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.