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Info • Pichia membranifaciens v1.0
Please note that this organism is for archival use only. Please see the current Pichia membranifaciens v2.0 site for the latest data and information.

Status

Version 1, March 2011. This draft assembly was produced using Roche (454), Sanger Fosmid, and shredded consensus from velvet assembled illumina data. 

Summary statistics for the Pichia membranifaciens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 11.50
Sequencing read coverage depth 38.95
# of contigs 143
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 3
Scaffold L50 (Mbp) 2.00
# of gaps 66
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 2.96, 2.68, 2.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other MERGED 7121 7091 99.6%
Other OASES 7613 7577 99.5%
Other RNNOTATOR 14619 14553 99.5%
Other VELVET 129020 125074 96.9%


Gene Models FilteredModels2
length (bp) of: average median
gene 1661 1367
transcript 1595 1328
exon 1223 1011
intron 221 114
description:
protein length (aa) 482 392
exons per gene 1.30 1
# of gene models 5363


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.