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Info • Pichia pastoris


[March 2013]
The genome sequence and gene prediction of Pichia pastoris were not determined by the JGI, but was downloaded from NCBI. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the known and predicted proteins.

Summary statistics for the Pichia pastoris GS115 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 9.22
Sequencing read coverage depth 1
# of contigs 5
# of scaffolds 4
# of scaffolds >= 2Kbp 4
Scaffold N50 2
Scaffold L50 (Mbp) 2.39
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.80, 2.39, 2.25

Gene Models ExternalModels
length (bp) of: average median
gene 1443 1197
transcript 1431 1191
exon 1285 1086
intron 101 65
protein length (aa) 477 397
exons per gene 1.11 1
# of gene models 5040

Genome Reference(s)


This project was not sequenced at the JGI.