Status
[March 2013]
The genome sequence and gene prediction of Pichia pastoris
were not determined by the JGI, but was downloaded from NCBI.
Please note that this copy of the genome is not maintained by NCBI
and is therefore not automatically updated. The JGI Annotation
Pipeline was used to add additional functional annotation to the
known and predicted proteins.
Summary statistics for the Pichia pastoris GS115 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 9.22 |
| Sequencing read coverage depth | 1 |
| # of contigs | 5 |
| # of scaffolds | 4 |
| # of scaffolds >= 2Kbp | 4 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 2.39 |
| # of gaps | 1 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.80, 2.39, 2.25 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1443 | 1197 |
| transcript | 1431 | 1191 |
| exon | 1285 | 1086 |
| intron | 101 | 65 |
| description: | ||
| protein length (aa) | 477 | 397 |
| exons per gene | 1.11 | 1 |
| # of gene models | 5040 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
De Schutter K, Lin YC, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y, Callewaert N
Genome sequence of the recombinant protein production host Pichia pastoris.
Nat Biotechnol. 2009 Jun;27(6):561-6. doi: 10.1038/nbt.1544
De Schutter K, Lin YC, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y, Callewaert N
Genome sequence of the recombinant protein production host Pichia pastoris.
Nat Biotechnol. 2009 Jun;27(6):561-6. doi: 10.1038/nbt.1544
Funding
This project was not sequenced at the JGI.
