Info • Piedraia hortae v1.1

Status

[Aug 2013] The Piedraia hortae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44849 (Gnerre et al., 2010).

Summary statistics for the Piedraia hortae CBS 480.64 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 16.95
Sequencing read coverage depth 78.7x
# of contigs 214
# of scaffolds 132
# of scaffolds >= 2Kbp 128
Scaffold N50 22
Scaffold L50 (Mbp) 0.26
# of gaps 82
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.73, 0.68, 0.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 16407 14690 89.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1455 1202
transcript 1390 1143
exon 757 456
intron 80 51
description:
protein length (aa) 410 325
exons per gene 1.84 2
# of gene models 7572


Collaborators

Joseph Spatafora, Oregon State University, USA.
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.