Info • Piloderma olivaceum F 1598 v1.0

Status

Assembly v1 (February 2012) is a draft assembly of Solexa gDNA reads. A total of 715 scaffolds and 59.3 Mbp were assembled using AllPathsLG.

Summary statistics for the Piloderma olivaceum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 59.33
Sequencing read coverage depth 102.8x
# of contigs 4469
# of scaffolds 715
# of scaffolds >= 2Kbp 569
Scaffold N50 33
Scaffold L50 (Mbp) 0.53
# of gaps 3754
% of scaffold length in gaps 11.8%
Three largest Scaffolds (Mbp) 1.66, 1.42, 1.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Combest_assemblies 188381 176293 93.6%
Other Rnnotator_contigs 60265 55154 91.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1453 1109
transcript 1175 900
exon 247 156
intron 76 58
description:
protein length (aa) 332 240
exons per gene 4.75 3
# of gene models 21583


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.