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Info • Coniella lustricola B22-T-1 v1.0

Status

[October 2016] The Coniella lustricola B22-T-1 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The ESTs % mapped to genome is low due to rRNA contamination in the transcriptome libraries, which included 88 - 90% rRNA. 

Summary statistics for the Coniella sp v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.56
Sequencing read coverage depth 139.1x
# of contigs 870
# of scaffolds 634
# of scaffolds >= 2Kbp 583
Scaffold N50 76
Scaffold L50 (Mbp) 0.14
# of gaps 236
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.71, 0.56, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34937 32090 91.9%
Ests est.fasta 615407770 68576261 11.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1718 1467
transcript 1538 1283
exon 599 379
intron 117 84
description:
protein length (aa) 443 358
exons per gene 2.56 2
# of gene models 11317


Collaborators

Joey Spatafora, Oregon State, Oregon

Daniel Raudabaugh, University of Illinois at Urbana Champaign

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.