Info • Fomitopsis betulina CIRM-BRFM 1772 v1.1

Status

[December 2017] The Fomitopsis betulina CIRM-BRFM 1772 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fomitopsis betulina CIRM-BRFM 1772 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.86
Sequencing read coverage depth 79.28x
# of contigs 251
# of scaffolds 251
# of scaffolds >= 2Kbp 250
Scaffold N50 41
Scaffold L50 (Mbp) 0.29
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.86, 0.99, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63957 60809 95.1%
Ests est.fasta 111239085 108848708 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1841 1589
transcript 1516 1304
exon 252 157
intron 67 56
description:
protein length (aa) 437 358
exons per gene 6.03 5
# of gene models 12070


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.