Info • Piptocephalis cylindrospora RSA 2659 single-cell v3.0

Status

[January 2018] The Piptocephalis cylindrospora RSA2659 coassembly was constructed from eight 1-cell and one 100-cell Illumina libraries, assembled together with Spades, and annotated with the JGI Annotation pipeline.

Summary statistics for the Piptocephalis cylindrospora RSA 2659 single-cell v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.75
Sequencing read coverage depth 1.0x
# of contigs 1383
# of scaffolds 1381
# of scaffolds >= 2Kbp 1381
Scaffold N50 282
Scaffold L50 (Mbp) 0.01
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.06, 0.05, 0.04


Gene Models FilteredModels1
length (bp) of: average median
gene 1336 1070
transcript 1122 897
exon 373 195
intron 108 82
description:
protein length (aa) 374 299
exons per gene 3.01 2
# of gene models 4301


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.