Info • Piriformospora indica DSM 11827 from MPI


The genome sequence and gene prediction of Piriformospora indica were not determined by the JGI, but were received from their author Alga Zuccaro at the MPI für terrestrische Mikrobiologie on November 28 2011. Please note that this copy of the genome is not maintained by MPI and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Alga's assembly scaffolds and proteins.

Summary statistics for the Piriformospora indica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 24.98
Sequencing read coverage depth 22
# of contigs 2398
# of scaffolds 1884
# of scaffolds >= 2Kbp 945
Scaffold N50 133
Scaffold L50 (Mbp) 0.05
# of gaps 257
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 0.25, 0.23, 0.22

Gene Models ExternalModels1
length (bp) of: average median
gene 1551 1283
transcript 1313 1074
exon 255 146
intron 59 50
protein length (aa) 438 358
exons per gene 5.16 4
# of gene models 11767

Genome Reference(s)


This project was not sequenced at the JGI.